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Can You Change Your Microbiota With Diet?

A gold-standard randomized controlled trial of diet found it is very difficult to change your microbiota long-term.

Since the turn of the 21st century, scientists have learned a great deal about our microbiota, the collections of microbes each of us hosts in and on us. They have been discovering fascinating links between intestinal microbes and the brain or the immune system. The pattern of intestinal microbes, the variety of species, differs between people of normal weight and those who are obese. (Here is a summary of some of that research in Nutrition Today.) But doctors don’t know if you can change your microbiota by changing your diet or losing weight.

How Would You Try to Change Your Microbiota?

A year-long study of dieters suggest that the microbiota is resilient (American Journal of Clinical Nutrition, June 2020). The investigators studied microbial diversity among 49 participants in a randomized controlled trial testing healthy low-carb vs healthy low-fat diets. These were some of the volunteers in the DIETFITS study (JAMA, Feb. 20 2018). Diet Intervention Examining The Factors Interacting with Treatment Success. Investigators wanted to know whether genotype or insulin resistance would predict weight loss. (Spoiler: Neither did.) They also wanted to explore the role of the microbiota.

People in both groups were advised to maximize whole grains and vegetables and minimize added sugars and refined grains. Investigators collected and analyzed stool samples from the participants. That way, they captured a picture of the microbiota from each volunteer five times during the year. The baseline microbiota did not predict the amount of weight each participant lost.

How Much Did the Microbiota Change?

Within the first three months of the study, there were noticeable changes in the types of microbes found. People following a low-carb diet had more Proteobacteria, Bacteroidetes and Firmicutes species. Those on the low-fat diet had fewer Firmicutes and Actinobacteria species. These significant changes did not last, however. By the end of the year, most volunteers’ microbiota had become once again very similar to its initial condition.

That was a surprise, because the participants continued to follow their assigned diets and lose weight for the rest of the study. According to the investigators, such microbiota resilience may help explain why people sometimes regain lost weight even on strict diets. 

The researchers conclude:

“When considering the established contribution of obesity-associated microbiotas to weight gain in animal models, microbiota resilience may need to be overcome for long-term alterations to human physiology.”

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About the Author
Terry Graedon, PhD, is a medical anthropologist and co-host of The People’s Pharmacy radio show, co-author of The People’s Pharmacy syndicated newspaper columns and numerous books, and co-founder of The People’s Pharmacy website. Terry taught in the Duke University School of Nursing and was an adjunct assistant professor in the Department of Anthropology. She is a Fellow of the Society of Applied Anthropology. Terry is one of the country's leading authorities on the science behind folk remedies..
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